Stuart Levine

About

Work

Massachusetts Institute of Technology

MIT BioMicro Center Director

Sep 2008

→

Present

Whitehead Institute for Biomedical Research

Postdoctoral associate / Research Scientist

Aug 2004

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Sep 2008

Education

Harvard University

United States of America

Aug 2004

→

Sep 2008

PhD

Massachusetts Institute of Technology

United States of America

Aug 2004

→

Sep 2008

Publications

Enhancer Reprogramming in Melanoma Immune Checkpoint Therapy Resistance

Jan 2022

Summary

preprint

A single-cell liver atlas of Plasmodium vivax infection.

Jan 2022

Published by

Cell host & microbe

Summary

journal-article

NExtSEEK: Extending SEEK for Active Management of Interoperable Metadata.

Jan 2022

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

Developmental Deconvolution for Classification of Cancer Origin.

Jan 2022

Published by

Cancer discovery

Summary

journal-article

Myeloid cell subsets that express latency-associated peptide promote cancer growth by modulating T cells.

Jan 2021

Published by

iScience

Summary

journal-article

Developmental Deconvolution for Classification of Cancer Origin

Jan 2021

Summary

preprint

Gene signatures and host-parasite interactions revealed by dual single-cell profiling of <i>Plasmodium vivax</i> liver infection

Jan 2021

Summary

preprint

Quantitative mapping of the cellular small RNA landscape with AQRNA-seq.

Jan 2021

Published by

Nature biotechnology

Summary

journal-article

Human physiomimetic model integrating microphysiological systems of the gut, liver, and brain for studies of neurodegenerative diseases.

Jan 2021

Published by

Science advances

Summary

journal-article

Benchmarking cDNA sequencing on PromethION

Jan 2020

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities.

Jan 2020

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

Multisite Evaluation of Next-Generation Methods for Small RNA Quantification.

Jan 2020

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

SPRI Beads-based Size Selection in the Range of 2-10kb.

Jan 2020

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

High-throughput Minitaturized RNA-Seq Library Preparation.

Jan 2020

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

Cross-Site Evaluation of Commercial Sanger Sequencing Chemistries.

Jan 2020

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

A set of miniaturized high-throughput library protocols for RNA sequencing

Jan 2020

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

HONEY I SHRUNK THE KITS: Practical Adventures in Reducing Assay Volumes

Jan 2020

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

Ketone Body Signaling Mediates Intestinal Stem Cell Homeostasis and Adaptation to Diet.

Jan 2019

Published by

Cell

Summary

journal-article

Stabilization of the Max Homodimer with a Small Molecule Attenuates Myc-Driven Transcription.

Jan 2019

Published by

Cell chemical biology

Summary

journal-article

Encapsulated miR-200c and Nkx2.1 in a nuclear/mitochondria transcriptional regulatory network of non-metastatic and metastatic lung cancer cells.

Jan 2019

Published by

BMC cancer

Summary

journal-article

Global transcriptional regulation of innate immunity by ATF-7 in C. elegans.

Jan 2019

Published by

PLoS genetics

Summary

journal-article

Cross Site Evaluation of Sanger Sequencing Dye Chemistries

Jan 2019

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

GBIRG Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities

Jan 2019

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

Miniaturization of Illumina Library Preparation for High Throughput, Plate-Based Next Generation Sequencing Studies

Jan 2019

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

Sequencing-based quantitative mapping of the cellular small RNA landscape

Jan 2019

Summary

preprint

Single-cell transcriptomic profiling of the aging mouse brain.

Jan 2019

Published by

Nature neuroscience

Summary

journal-article

H3K27me3-mediated silencing of structural genes is required for zebrafish heart regeneration.

Jan 2019

Published by

Development (Cambridge, England)

Summary

journal-article

HRI coordinates translation necessary for protein homeostasis and mitochondrial function in erythropoiesis.

Jan 2019

Published by

eLife

Summary

journal-article

Global transcriptional regulation of innate immunity in C. elegans

Jan 2018

Summary

other

Iron and Heme Coordinate Erythropoiesis through HRI-Mediated Regulation of Protein Translation and Gene Expression

Jan 2018

Summary

other

Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

Jan 2018

Summary

preprint

In Vitro Culture, Drug Sensitivity, and Transcriptome of Plasmodium Vivax Hypnozoites.

Jan 2018

Published by

Cell host & microbe

Summary

journal-article

Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction.

Jan 2018

Published by

BMC genomics

Summary

journal-article

Cross-Site Comparison of Ribosomal Depletion Kits for Illumina RNAseq Library Construction

Jan 2017

Summary

other

Host proteostasis modulates influenza evolution.

Jan 2017

Published by

eLife

Summary

journal-article

The Hox proteins Ubx and AbdA collaborate with the transcription pausing factor M1BP to regulate gene transcription.

Jan 2017

Published by

The EMBO journal

Summary

journal-article

Mutational spectra of aflatoxin B1 in vivo establish biomarkers of exposure for human hepatocellular carcinoma.

Jan 2017

Published by

Proceedings of the National Academy of Sciences of the United States of America

Summary

journal-article

Monitoring Error Rates In Illumina Sequencing.

Jan 2016

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

RNA polymerase II promoter-proximal pausing in mammalian long non-coding genes.

Jan 2016

Published by

Genomics

Summary

journal-article

Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo.

Jan 2015

Published by

Nucleic acids research

Summary

journal-article

Transportable, Chemical Genetic Methodology for the Small Molecule-Mediated Inhibition of Heat Shock Factor 1.

Jan 2015

Published by

ACS chemical biology

Summary

journal-article

Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences.

Jan 2014

Published by

Nature communications

Summary

journal-article

TRIM28 regulates RNA polymerase II promoter-proximal pausing and pause release.

Jan 2014

Published by

Nature structural & molecular biology

Summary

journal-article

Arsenic exposure perturbs the gut microbiome and its metabolic profile in mice: an integrated metagenomics and metabolomics analysis.

Jan 2014

Published by

Environmental Health Perspectives

Summary

journal-article

Diverse cell stresses induce unique patterns of tRNA up- and down-regulation: tRNA-seq for quantifying changes in tRNA copy number.

Jan 2014

Published by

Nucleic acids research

Summary

journal-article

Polycomb Repressive Complex 2 regulates lineage fidelity during embryonic stem cell differentiation.

Jan 2014

Published by

PloS one

Summary

journal-article

H2A.Z acidic patch couples chromatin dynamics to regulation of gene expression programs during ESC differentiation.

Jan 2013

Published by

PLoS genetics

Summary

journal-article

Which RNA-Seq Processing Algorithm Should I Pick? A Comparison of RNA-Seq Pipelines Based on Experimental Design, Sample Properties and Sequencing Technology.

Jan 2013

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

Gut microbiome perturbations induced by bacterial infection affect arsenic biotransformation.

Jan 2013

Published by

Chemical research in toxicology

Summary

journal-article

Lane-by-lane sequencing using Illumina's Genome Analyzer II.

Jan 2013

Published by

BioTechniques

Summary

journal-article

Admixture and recombination among Toxoplasma gondii lineages explain global genome diversity.

Jan 2012

Published by

Proceedings of the National Academy of Sciences of the United States of America

Summary

journal-article

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage.

Jan 2012

Published by

Cell

Summary

journal-article

Comparison of SYBR Enzymes and Standards in Illumina Library Quantification.

Jan 2011

Published by

Journal of biomolecular techniques : JBT

Summary

journal-article

miR-132, an experience-dependent microRNA, is essential for visual cortex plasticity.

Jan 2011

Published by

Nature neuroscience

Summary

journal-article

Mediator and cohesin connect gene expression and chromatin architecture.

Jan 2010

Published by

Nature

Summary

journal-article

Ronin/Hcf-1 binds to a hyperconserved enhancer element and regulates genes involved in the growth of embryonic stem cells.

Jan 2010

Published by

Genes & development

Summary

journal-article

Effects of age on meiosis in budding yeast.

Jan 2009

Published by

Developmental cell

Summary

journal-article

H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment.

Jan 2008

Published by

Cell

Summary

journal-article

Divergent transcription from active promoters.

Jan 2008

Published by

Science (New York, N.Y.)

Summary

journal-article

Aberrant chromatin at genes encoding stem cell regulators in human mixed-lineage leukemia.

Jan 2008

Published by

Genes & development

Summary

journal-article

Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells.

Jan 2008

Published by

Cell

Summary

journal-article

A chromatin landmark and transcription initiation at most promoters in human cells.

Jan 2007

Published by

Cell

Summary

journal-article

Foxp3 occupancy and regulation of key target genes during T-cell stimulation.

Jan 2007

Published by

Nature

Summary

journal-article

Control of developmental regulators by Polycomb in human embryonic stem cells.

Jan 2006

Published by

Cell

Summary

journal-article

Polycomb complexes repress developmental regulators in murine embryonic stem cells.

Jan 2006

Published by

Nature

Summary

journal-article

Genome-wide map of nucleosome acetylation and methylation in yeast.

Jan 2005

Published by

Cell

Summary

journal-article

The core centromere and Sgo1 establish a 50-kb cohesin-protected domain around centromeres during meiosis I.

Jan 2005

Published by

Genes & development

Summary

journal-article

Core transcriptional regulatory circuitry in human embryonic stem cells.

Jan 2005

Published by

Cell

Summary

journal-article

Division of labor in polycomb group repression.

Jan 2004

Published by

Trends in biochemical sciences

Summary

journal-article

Menin associates with a trithorax family histone methyltransferase complex and with the hoxc8 locus.

Jan 2004

Published by

Molecular cell

Summary

journal-article

The core of the polycomb repressive complex is compositionally and functionally conserved in flies and humans.

Jan 2002

Published by

Molecular and cellular biology

Summary

journal-article